species:   Rhsol
pid:       PID0503
parent:    Rhi-milR-176
paralog:   
locus:     KB317709.1:549448-549545
matures:   ['UUUGGAAUUGCUGGAUGUGGU', 'UGUCAUUCACGCAAUACAU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317709.1:549448-549545

3 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

         ************************                                 ***********************         
UGCAAAAUAUAUUGUCAUUCACGCAAUACAUGUAGAUCAUAUGAUACAGAUUAACUAUGAAUAGCAUUUUGGAAUUGCUGGAUGUGGUGUAUCAGGUG
.((...((((((((.((((((.(((((.(((((...(((((((((....))))..)))))...)))...))..)))))))))))))))))))...)).
-------------------------------------------------------------------UUUGGAAUUGCUGGAUGUGGU---------- l=21 a=0 c
------------UGUCAUUCACGCAAUACAU------------------------------------------------------------------- l=19 a=0 c*
--------------------------------------------------------------------UUGGAAUUGCUGGAUGUGGUG--------- l=21 a=1 ma
-----------UUGUCAUUCACGCAAUACAUGU----------------------------------------------------------------- l=22 a=0 ma*

--------------------------------------------------------------------UUGGAAUUGCUGGAUGUGGUG--------- l=21 a=1 (ma)

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-011
